Reference models · VarnaOps

Each row is one reference: the model that answers a run against it, the atlas it was trained on, the build it came from, and the SHA-256 of the checkpoint itself. The studies each model was trained from are listed, with DOIs and licences, on the attribution page; each atlas report describes one reference in full. The models run as part of the service and are not distributed.

One model per reference

Reference	Model	Cells	Cell types	Build	Model fingerprint (SHA-256)	Atlas report
Human blood & immune	scANVI · scvi-tools 1.4.2 · 30 latents	15,340,405	20	v1 · `e9d75017acc8`	`05dbd1e71818aaf6a393798b8907338cc68d6ae7a8fe5051d9ddd508c4d2422a`	Open
Human cortex	scANVI · scvi-tools 1.4.2 · 30 latents	6,477,429	19	v1 · `0ed05b1b23bb`	`afffaf0787ebee15022f97cdd5d517ef05a8040a69aaefc4961807a9cf15eecf`	Open
Human eye	scANVI · scvi-tools 1.4.2 · 30 latents	6,806,918	36	v1 · `e9d75017acc8`	`5a273004d6ff9bc76700c45105a24d2d4e224eb7b536e013d974a01cfb70272e`	Open
Human lung	scANVI · scvi-tools 1.4.2 · 30 latents	2,706,526	47	v1 · `0ed05b1b23bb`	`5b2335aaa05d18b16526cb6a6b5cc39702eee24ef76bcf0e301e9c8cf29e549b`	Open
Human gut	scANVI · scvi-tools 1.4.2 · 30 latents	1,680,016	37	v1 · `e9d75017acc8`	`6df570e906dba5dba5c2abe9758028ccabc668fc4ddc0fc3cc96d26a01846937`	Open
Human breast	scANVI · scvi-tools 1.4.2 · 30 latents	2,406,758	21	v1 · `e9d75017acc8`	`8e93f8a160f064f9ee8aa7871c9db453ac3e75842a1077cc2a3d382b3db19e63`	Open
Human heart	scANVI · scvi-tools 1.4.2 · 30 latents	2,487,523	21	v1 · `e9d75017acc8`	`96e84412ba42cce507581ff0ff423e1dc7262c671902decc80ee1cf33323752b`	Open
Human liver	scANVI · scvi-tools 1.4.2 · 30 latents	436,315	16	v1 · `e9d75017acc8`	`e34761c08c5842471cfc87a9cdb6fd94ddbffdca2249e374f0cfd4e1ead36664`	Open
Human kidney	scANVI · scvi-tools 1.4.2 · 30 latents	421,107	24	v1 · `e9d75017acc8`	`87b5ed41988b2af8a8e9f21608da699509ef585959c87482882c0d56769477a6`	Open
Human skin	scANVI · scvi-tools 1.4.2 · 30 latents	475,731	26	v1 · `e9d75017acc8`	`5eee721f474f65143c47000465cffef6cac90babd8943328d6988eb3a65a66ce`	Open
Human adipose	scANVI · scvi-tools 1.4.2 · 30 latents	413,164	17	v1 · `e9d75017acc8`	`392031bb2ea2181d28a8c1c531e751cc190e979595fde5af5572efbac6618935`	Open
Human muscle	scANVI · scvi-tools 1.4.2 · 30 latents	445,607	25	v1 · `e9d75017acc8`	`eeccc5427e6170f4d55f9706ae89072a9ad9bfb21fe6581d9681f366a069da36`	Open
Human female reproductive	scANVI · scvi-tools 1.4.2 · 30 latents	525,606	20	v1 · `e9d75017acc8`	`b66ae3a2ee1aefe721bf58c99663f7eb0c864330a9faa3d7583e97bef4925fa4`	Open
Mouse brain	scANVI · scvi-tools 1.4.2 · 30 latents	2,949,387	25	v1 · `e9d75017acc8`	`037463fd0a9a2789b19b3f437b79d9cba8f7e9ab5a5ae6d9eb21bc399edc45f9`	Open
Mouse multi organ	scANVI · scvi-tools 1.4.2 · 30 latents	4,804,872	88	v1 · `c20c0f3b0235`	`172598a3179b401806f593a4393183c20501cb33814523a7ba34722960aa7482`	Open
Human prefrontal cortex	scANVI · scvi-tools 1.4.2 · 30 latents	5,936,958	55	v1 · `8f5a9796b330`	`471529bdab6ecb3b4f4c2b846e86009aadfbf4ed5ec9e574023de4d25baa15d3`	Open

The table above is complete without JavaScript; the Atlas report buttons are not. The reports are published on a separate origin, so the page reads that address from the site's configuration when it loads rather than carrying it in the markup. With scripts off every row still reads, and those buttons stay dark.

Matching a run to its model

The fingerprint is what makes a run checkable without the file. Every analysis bundle records the SHA-256 of the checkpoint that produced it, beside the reference name, its version and the build commit, so two bundles can be shown to have used the same model byte for byte, and a bundle can be matched against the row above for the reference it names. If a model is ever replaced, this row changes with it: the table is generated from the checkpoints the service loads, so the fingerprint here is the one serving today.

Training data

CZ CELLxGENE Census, CC BY 4.0, attributed per study on the attribution page and in each build's manifest. We do not redistribute reference expression data.